TP 3.1: Manipulating archives
Prerequisites¶
Use your web browser to download fasta data from following url:
https://web-genobioinfo.toulouse.inrae.fr/~formation/unix/tp3/reads.fastq.gz
Transfert this file with Filezilla to genobioinfo
at the following path:
~/save/tp_unix/data
Uncompress a file¶
Question
Move inside the directory data
and uncompress the .gz
file.
Solution
cd ~/save/tp_unix/data
gunzip reads.fastq.gz
Download a file directly on the server¶
Question
Alway in the directory data
, download with command wget
a Swissprot file from http://www.uniprot.org/uniprot/Q96D37.txt
Solution
wget http://www.uniprot.org/uniprot/Q96D37.txt
Compress / Uncompress an archive¶
Question
Go back inside the directory ~/save/tp_unix
.
Archive and compress the directory blast_result
.
Display the directory size and its content by using the command du
.
Display the archive size.
Solution
cd ~/save/tp_unix
tar -cvzf mon_archive.tgz blast_result
du -csh blast_result
du -sh mon_archive.tgz
Remove a directory and create it again from archive¶
Question
First, remove the directory blast_result
, then uncompress the archive created in previous steps.
Solution
rm -rf blast_result
tar -xvzf mon_archive.tgz