Chap II. Tutorial singularity / Correction image

Exercise 6 : Use singularity and understand bind directory.

  • Execute tldr singularity to explore all functions available with singularity.
    tldr singularity
    
  • You should have an image store in work/singularity/....img coming for rnaseq workfow with a bowtie2 inside.
  • Start a container from this image and get a shell inside of it: singularity shell image.sif

    module load system/singularity-3.5.3
    singularity shell work/singularity/nextflow-rnatoy@sha256-9ac0345b5851b2b20913cb4e6d469df77cf1232bafcadf8fd929535614a85c75.img
    
  • Do you have access to the software bowtie2 ? yes

  • Do you have access to /bank/ ? no
  • Get out of the image, with Ctrl+D
  • Do you have access to the software bowtie2 ? no
  • Do you have access to /bank/ ? yes
  • Start the container with the option -B bank
    singularity shell -B /bank image.sif
    
  • Do you have access to /bank/ ? yes

Exercise 7 :

No need of correction , follow all steps described in section II.a.

results matching ""

    No results matching ""